PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT32450
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family NAC
Protein Properties Length: 315aa    MW: 34756.7 Da    PI: 6.6745
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT32450genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.93.4e-52111541128
       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...............kvka...eekewyfFskrdkkyatgkrknratksgyW 83 
               +ppGfrFhPt+eelv +yL++kv+++k++l ++i+evd+y++ePwdL++               +  a   +++ewyfFs +d+ky++g+r+nrat++g+W
  EMT32450  11 VPPGFRFHPTEEELVGYYLARKVAAQKIDL-DIIQEVDLYRIEPWDLQErcggggrggrgarqvA--AedeQSSEWYFFSFKDRKYPSGTRTNRATAAGFW 108
               69****************************.99**************956899999999988542..3222445*************************** PP

       NAM  84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
               katg+dk+v+s+ ++ ++g++ktLvfy+grap+g+ktdW++heyrl
  EMT32450 109 KATGRDKPVMSSrSRGVIGMRKTLVFYRGRAPNGRKTDWIIHEYRL 154
               **********9856678***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-558175IPR003441NAC domain
PROSITE profilePS5100556.68611175IPR003441NAC domain
PfamPF023651.1E-2612154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MEQQHEEESC VPPGFRFHPT EEELVGYYLA RKVAAQKIDL DIIQEVDLYR IEPWDLQERC  60
GGGGRGGRGA RQVAAEDEQS SEWYFFSFKD RKYPSGTRTN RATAAGFWKA TGRDKPVMSS  120
RSRGVIGMRK TLVFYRGRAP NGRKTDWIIH EYRLQTSEHA PTQEEGWVVC RAFQKPAVNQ  180
RPSYIFPPPY AAAPGLGGYY DTRPRLHGQV GGDHHFLQSA AGAAGAGTLG FPGQGAQYCS  240
DELLESKQSL FGNIPQLIES PPTTAVAGCG DTGYGIGQHG EVAAGIDWNF LDSLLSTTQL  300
HEYSATAASQ LHLQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-5121756168Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001131327.11e-117secondary wall NAC transcription factor 4
RefseqXP_008667100.11e-117PREDICTED: secondary wall NAC transcription factor 4 isoform X1
TrEMBLM8C5530.0M8C553_AEGTA; NAC domain-containing protein 7
STRINGMLOC_67250.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25943791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71930.19e-88vascular related NAC-domain protein 7